The software requires the Java runtime environment >=1.7.0 (JRE 7.0) which can be downloaded from oracle.
java -jar swat.jar Protein.fasta Nucleotide.fasta
Important: The files of the protein sequence and the nucleotide sequence have to be in fasta-format and must end with ".fasta". The protein sequence has to be followed by the nucleotide sequence.
Our paper "Analysis, identification and visualization of subgroups in genomics" has been published in Briefings in Bioinformatics.
Our paper "A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data" has been published in Advances in Data Analysis and Classification.