The software requires the Java runtime environment >=1.7.0 (JRE 7.0) which can be downloaded from oracle.
java -jar swat.jar Protein.fasta Nucleotide.fasta
Important: The files of the protein sequence and the nucleotide sequence have to be in fasta-format and must end with ".fasta". The protein sequence has to be followed by the nucleotide sequence.
Our paper "Constraining classifiers in molecular analysis: invariance and robustness" has been published in Journal of the Royal Society Interface.
Our paper "Two-Stream Attention Network for Pain Recognition from Video Sequences" has been published in Sensors (Basel).