An R package that analyzes cluster alternatives based on multi-objective optimization of cluster validation indices: MOCCA R package
Please also see our corresponding publication:
Kraus JM, Müssel C, Palm G, Kestler HA. Multi-objective selection for collecting cluster alternatives. Comput Stat 26(2): 341-353, 2011. https://doi.org/10.1007/s00180-011-0244-6
Our paper "Analysis, identification and visualization of subgroups in genomics" has been published in Briefings in Bioinformatics.
Our paper "A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data" has been published in Advances in Data Analysis and Classification.