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Medical Systems Biology

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GiANT

Gene Set Uncertainty in Enrichment Analysis
An R package toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.

Documentation

Documentation is included in the R package. You can get help for a command by typing ?<command> inside R when the package is loaded.

Installation

The most recent source and binary packages for BoolNet are available from CRAN.

Citing GiANT

To cite the package in publications, use:

Schmid F, Schmid M, Müssel C, Sträng JE, Buske C, Bullinger L, Kraus JM, Kestler HA. GiANT: gene set uncertainty in enrichment analysis. Bioinformatics 32(12): 1891-1894, 2016.  https://doi.org/10.1093/bioinformatics/btw030

Latest News

 

Our paper "Constraining classifiers in molecular analysis: invariance and robustness" has been published in Journal of the Royal Society Interface.

 

Our paper "Measuring Mental Effort for Creating Mobile Data Collection Applications" has been published in International Journal of Environmental Research and Public Health.