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Medical Systems Biology

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GiANT

Gene Set Uncertainty in Enrichment Analysis
An R package toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.

Documentation

Documentation is included in the R package. You can get help for a command by typing ?<command> inside R when the package is loaded.

Installation

The most recent source and binary packages for BoolNet are available from CRAN.

Citing GiANT

To cite the package in publications, use:

Schmid F, Schmid M, Müssel C, Sträng JE, Buske C, Bullinger L, Kraus JM, Kestler HA. GiANT: gene set uncertainty in enrichment analysis. Bioinformatics 32(12): 1891-1894, 2016.  https://doi.org/10.1093/bioinformatics/btw030

Latest News

 

Our paper "Analysis, identification and visualization of subgroups in genomics" has been published in Briefings in Bioinformatics.

 

Our paper "A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data" has been published in Advances in Data Analysis and Classification.