Gene Set Uncertainty in Enrichment Analysis
An R package toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.
Documentation is included in the R package. You can get help for a command by typing ?<command> inside R when the package is loaded.
The most recent source and binary packages for BoolNet are available from CRAN.
To cite the package in publications, use:
Schmid F, Schmid M, Müssel C, Sträng JE, Buske C, Bullinger L, Kraus JM, Kestler HA. GiANT: gene set uncertainty in enrichment analysis. Bioinformatics 32(12): 1891-1894, 2016. https://doi.org/10.1093/bioinformatics/btw030
Our paper "Constraining classifiers in molecular analysis: invariance and robustness" has been published in Journal of the Royal Society Interface.
Our paper "Measuring Mental Effort for Creating Mobile Data Collection Applications" has been published in International Journal of Environmental Research and Public Health.