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Medical Systems Biology

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GiANT

Gene Set Uncertainty in Enrichment Analysis
An R package toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.

Documentation

Documentation is included in the R package. You can get help for a command by typing ?<command> inside R when the package is loaded.

Installation

The most recent source and binary packages for BoolNet are available from CRAN.

Citing GiANT

To cite the package in publications, use:

Schmid F, Schmid M, Müssel C, Sträng JE, Buske C, Bullinger L, Kraus JM, Kestler HA. GiANT: gene set uncertainty in enrichment analysis. Bioinformatics 32(12): 1891-1894, 2016.  https://doi.org/10.1093/bioinformatics/btw030

Latest News

 

Our paper "Unraveling the Molecular Tumor-Promoting Regulation of Cofilin-1 in Pancreatic Cancer" has been published in MDPI Cancers.

 

Our paper "Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases" has been published online first in Briefings in Bioinformatics.