Structural RNA alignment by multi-objective optimization: RNA-Pareto
Please also see our corresponding publication:
Schnattinger T, Schöning U, Marchfelder A, Kestler HA. RNA-Pareto: Interactive Analysis of Pareto-optimal RNA Sequence-Structure Alignments. Bioinformatics 29(23): 3102-4, 2013. https://doi.org/10.1093/bioinformatics/btt536
Our paper "Analysis, identification and visualization of subgroups in genomics" has been published in Briefings in Bioinformatics.
Our paper "A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data" has been published in Advances in Data Analysis and Classification.