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Medical Systems Biology

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Swat

A tool for aligning DNA/RNA sequences and protein sequences.

Swat is a java commandline software based on dynamic programming to calculate optimal local alignments of DNA/RNA sequences and protein sequences.

Download latest version

 

Documentation:

1) Installation

2) Running Swat

 

Please also see our corresponding publication:

Fürstberger A, Maucher M, Kestler HA. Extended pairwise local alignment of wild card DNA/RNA-sequences using dynamic programmingJ Stat Comput Simul 85(1): 3-13, 2015. https://doi.org/10.1080/00949655.2014.928294

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Our paper "Unraveling the Molecular Tumor-Promoting Regulation of Cofilin-1 in Pancreatic Cancer" has been published in MDPI Cancers.

 

Our paper "Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases" has been published online first in Briefings in Bioinformatics.