Pareto-optimal balancing conflicting objectives in genome subgroup analysis.
AVAtar is a readily usable standalone software for analysis and visualisation of alteration data. AVAtar features interactively customizable alteration plots, extensive data import capabilities and a multi-objective optimization algorithm to find alteration patterns, e.g. gene sets with mutually exclusive alterations or small gene sets with high sample coverage.
The software is available at
Our paper "Analysis, identification and visualization of subgroups in genomics" has been published in Briefings in Bioinformatics.
Our paper "A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data" has been published in Advances in Data Analysis and Classification.