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Medical Systems Biology

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AVAtar

Pareto-optimal balancing conflicting objectives in genome subgroup analysis.

AVAtar is a readily usable standalone software for analysis and visualisation of alteration data. AVAtar features interactively customizable alteration plots, extensive data import capabilities and a multi-objective optimization algorithm to find alteration patterns,  e.g. gene sets with mutually exclusive alterations or small gene sets with high sample coverage.

The software is available at

https://github.com/sysbio-bioinf/avatar

Latest News

 

Our paper "Constraining classifiers in molecular analysis: invariance and robustness" has been published in Journal of the Royal Society Interface.

 

Our paper "Measuring Mental Effort for Creating Mobile Data Collection Applications" has been published in International Journal of Environmental Research and Public Health.