Pareto-optimal balancing conflicting objectives in genome subgroup analysis
A Microsoft Excel add-in that visualizes gene expression ratios. The software is freely available upon request.
A new tool linking human cytomegalovirus drug resistance mutations to resistance phenotypes: HCMV drug resistance mutations
An open-source Java program for visualizing genomic abnormalities: IdeogramBrowser Software
JANet (Javascript AgeFactDB Network-viewer) is a specialized 3D Network Exploration and Visualization for Lifespan Data Exploration from AgeFactDB.
Software to analyze array CGH data with direct GPR import (Microsoft Excel add-in, Windows): MCGH Analyzer Software.
McKmeans: A highly efficient multi-core k-means algorithm for clustering extremely large datasets.
Structural RNA alignment by multi-objective optimization: RNA-Pareto
Differential expression analysis for sequence count data: RNASeq Count Analyzer
Perl program to create receiver operator charateristic (ROC) curves: http://www.CPAN.org.
Visualization of Ant Colony Optimization (contributed by Michael Grönert): Swarm
Swat is a java commandline software based on dynamic programming to calculate optimal local alignments of DNA/ RNA sequences and protein sequences.
TraqBio is a intuitively useable and a readily implementable open-source web application for progress tracking in core units. Its main intention is the communication of projects status between a core unit and its users: Source and Documentation
An open-source Java program for drawing area proportional Venn/Euler diagrams:VennMaster Software
ViSiBooL-visualization and simulation of Boolean networks with temporal constraints
An R package for the generation, reconstruction, simulation and analysis of Boolean networks: BoolNet R package
An R package toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets: GiANT R package
An R package that analyzes cluster alternatives based on multi-objective optimization of cluster validation indices: MOCCA R package
An R package that provides fast screening procedures for reflections of ordinal phenotype relations in highdimensional feature representations. It allows the detection of evidence for hypothesised orderings and explorative screenings for unknown relationships.
An R package for multi-objective parameter selection for classifiers: TunePareto R package
Our first quantum computing paper "Leveraging quantum computing for dynamic analyses of logical networks in systems biology" has been published in Patterns.
Our paper "Unsupervised domain adaptation for the detection of cardiomegaly in cross-domain chest X-ray images" has been published in Frontiers in Artificial Intelligence.
"Vaccine Side Effects in Health Care Workers after Vaccination against SARS-CoV-2: Data from TüSeRe:exact Study" has been published in Viruses-Basel.
"PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults – a study protocol" has been published in BMC Neurology.
Our paper "Federated Electronic Data Capture (fEDC): Architecture and Prototype" has been accepted for publiaction in the Journal of Biomedical Informatics.
Our paper "Efficient cross-valdation traversals in feature subset selection" has been published in Scientific Reports.
Our paper "CANTATA - prediction of missing links in Boolean networks using genetic programming" has been published in Bioinformatics.
Our paper "Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives" has been published in the Journal of Medical Internet Research mhealth and uhealth.
Our paper "Identification of dynamic driver sets controlling phenotypical landscapes" has been published in the Computational and Structural Biotechnology Journal.
Congratulations to Dr. Silke Werle for winning the 1st Prize with her pitch at the 1. Science Day held by ProTrainU.
Our paper "Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells" has been published in the Computational and Structural Biotechnology Journal.
The position paper "Is there a role for statistics in artificial intelligence" has been published online first in Advances in Data Analysis and Classification.