Medical Systems Biology

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Proseminar Bioinformatik und Systembiologie

 

Prof. Dr. Hans A. Kestler, Dr. Ludwig Lausser 


Termine und Ankündigung

  • Vorbesprechung: Dienstag, den 30.4.19 um 16:00 Uhr

  

Inhalt und Themen

Die Studierenden sollen anhand von Beispielen aus der Bioinformatik und Systembiologie das selbstständige Arbeiten in einem wissenschaftlichen Themengebiet erlernen. Sie sollen die grundlegenden Zusammenhänge und Herausforderungen des Themengebietes erfassen und in Form von wissenschaftlichen Vorträgen und Ausarbeitungen wiedergeben können. 

 

Themengebiete

High Throughput Technologien (Big Data)

  • Microarrays
  • Next Generation Sequencing (NGS)
 

 Data Science für hochdimensionale Daten

  • Datenintegration und -analyse
  • Identifikation von Biomarkern
  • Visualisierung

 

Modellierung biologischer Netzwerke

  • Bool'sche Netzwerke
  • Differentialgleichungssysteme (ODE)
  • Cloud-/ Gridcomputing

 

Besichtigung der Genomics-Facility (optional)

Im Rahmen des Proseminars wird eine Besichtung der Genomics-Facility der Universität Ulm angeboten. Für diese ist eine Anmeldung erforderlich.

 

Anforderungen

Zur Erlangung des Proseminarscheins wird von den Studierenden folgendes erwartet:

1. Schriftliche Ausarbeitung

2. Wissenschaftlicher Vortrag

3. Die Anwesenheit bei allen vorgegebenen Terminen.

4. Die Einhaltung aller vorgegebenen Fristen.

Latest News

 

Our paper "A systems biology approach to define mechanisms, phenotypes, and drivers in PanNETs with a personalized perspective" has been published in npj systems biology and applications.

 

"Supporting SURgery with GEriatric Co-Management and AI (SURGE-Ahead): A study protocol for the development of a digital geriatrician" has been published in PLoS One.

 

"Self-Assessment of Having COVID-19 With the Corona Check Mhealth App" has been published in IEEE Journal of Biomedical and Health Informatics.


Our first quantum computing paper "Leveraging quantum computing for dynamic analyses of logical networks in systems biology" has been published in Patterns.

 

Our paper "Unsupervised domain adaptation for the detection of cardiomegaly in cross-domain chest X-ray images" has been published in Frontiers in Artificial Intelligence.

 

  1. "The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination" has been published online first in the British Journal of Cancer.

 

"Vaccine Side Effects in Health Care Workers after Vaccination against SARS-CoV-2: Data from TüSeRe:exact Study" has been published in Viruses-Basel.

 

"PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults – a study protocol" has been published in BMC Neurology.

 

Our paper "Federated Electronic Data Capture (fEDC): Architecture and Prototype" has been accepted for publiaction in the Journal of Biomedical Informatics.

 

Our paper "Efficient cross-valdation traversals in feature subset selection" has been published in Scientific Reports.

 

Our paper "CANTATA - prediction of missing links in Boolean networks using genetic programming" has been published in Bioinformatics.

 

Our paper "Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives" has been published in the Journal of Medical Internet Research mhealth and uhealth.

 

Our paper "Identification of dynamic driver sets controlling phenotypical landscapes" has been published in the Computational and Structural Biotechnology Journal.