Medical Systems Biology

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colorpatch

colorpatch is an R-package for optimized rendering of fold changes and confidence values primarily designed for visualising gene expression profiles.

  • bivariate color maps (HSV color space),
  • a patch grid approach combined with a psychophysically optimized color scale.
Functionality for optimizing two-sided color scales is included.

The most recent version of the package and its documentation is available from colorpatch's CRAN page.

Documentation

Documentation is included in the R package. You can get help for a command by typing ?<command> (e.g. ?PlotUniformity) inside R when the package is loaded.

The vignette shows an example of this package. Call

vignette("introduction", package = "colorpatch")

within R after installing the package.

Installation

In an R console, type install.packages("colorpatch"). The package is now installed and can be loaded via library(colorpatch).

Latest News

Our paper "A model of the onset of the Senescence Associated Secretory Phenotype after DNA damage induced Senescence" has been accepted for publishing in PLOS Computational Biology.

Our paper "The influence of multi-class feature selection on the prediction of diagnostic phenotypeshas been accepted for publishing in Neural Processing Letters.