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Medical Systems Biology

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colorpatch

colorpatch is an R-package for optimized rendering of fold changes and confidence values primarily designed for visualising gene expression profiles.

  • bivariate color maps (HSV color space),
  • a patch grid approach combined with a psychophysically optimized color scale.
Functionality for optimizing two-sided color scales is included.

The most recent version of the package and its documentation is available from colorpatch's CRAN page.

Documentation

Documentation is included in the R package. You can get help for a command by typing ?<command> (e.g. ?PlotUniformity) inside R when the package is loaded.

The vignette shows an example of this package. Call

vignette("introduction", package = "colorpatch")

within R after installing the package.

Installation

In an R console, type install.packages("colorpatch"). The package is now installed and can be loaded via library(colorpatch).

Latest News

 

Our paper "Capturing dynamic relevance in Boolean networks using graph theoretical measures" has been published in Bioinformatics.

 

Our paper "Supporting Medical Staff from Psycho-Oncology with Smart Mobile Devices: Insights into the Development Process and First Results" has been published in the International Journal of Environmental Research and Public Health.

 

Our paper "Unraveling the Molecular Tumor-Promoting Regulation of Cofilin-1 in Pancreatic Cancer" has been published in MDPI Cancers.

 

We are happy we could contribute to Beutel et al (2021) "A prospective Feasibility Trial to Challenge Patient-Derived Pancreatic Cancer Organoids in Predicting Treatment Response" published in Cancers.