Medical Systems Biology
Hackathon Ulm
Cancelled!
The hackathon will start on the 10th of march at 10:00 am and ends at 6:00 pm, on the 11th of march it will start at 10:00 am and ends at 6:00 pm.
Location and travel information:
The DIFUTURE Hackathon will take place at Ulm University in O28 room H21, Albert-Einstein-Allee 11 - 89081 Ulm, Germany.
From Ulm Central Station: You can take the line number 2 or the bus number 5. You leave the public transportation at „Universität Süd“, change the side and head in the direction of east. Afterwards entering the O27, heading to the stairs in the middle and get one level up, heading then east again entering O28 and turn right.
Goals
- Reproduction of the "Demonstrator-Study" using DIFUTURE DUs
- Integration test of the DUs of a "Mini-DIC" (DUs 1/2/3/4/5/7/8/9)
- After the hackathon each site should be able to "install" its own DIC
- Development of an installation/deployment plan
- Planning the next developments/identification of "blind spots"
Agenda
- Define Roadmap of the meDICit
- Harmonization of the meDICit & Testing set-up (Identify existing issues, Test functionality/compatibility)
- Setting-up the meDICit - let's hack
- Data integration
- Solution script for set-up
- Simulate dataflow (Simulate dataflow from ETL to DW)
Timeline
10th of March
| Time | Topic |
| 09:45 - 10:00 | Get together and breakfast + Setup |
| 10:00 - 10:15 | Welcoming of the participants, Introduction to the Hackathon |
| 10:15 - 12:00 | Roadmap for DIFUTURE Deployment Units |
| 12:00 - 13:00 | Lunchbreak |
| 13:00 - 13:15 | First hint for the key |
| 13:15 - 15:15 | Start of Deployment Unit Harmonization – let‘s hack |
| 15:15 - 15:30 | Coffeebreak |
| 15:30 - 16:30 | Deployment Unit Harmonization – let‘s hack |
| 16:30 - 18:00 | Definition of the testing set-up |
| 18:00 | Pizza |
11th of March
| Time | Topic |
| 09:45 -10:00 | Get together and breakfast |
| 10:00 - 10:15 | Second hint for the key |
| 10:15 - 12:00 | Setting up the meDICit – let‘s hack |
| 12:00 - 13:00 | Lunchbreak |
| 13:00 - 15:15 | Setting up the meDICit – let‘s hack |
| 15:15 - 15:30 | Coffeebreak |
| 15:30 - 15:45 | Third hint for the key |
| 15:45 - 17:15 | Solution Script for set-up of the meDICit – Deployment Concept |
| 17:15 - 17:30 | Last hint for the key |
| 17:30 - 18:00 | Is there a key to leave the room? |
Latest News
Congratulations to Dr. Silke Werle for winning the 1st Prize with her pitch at the 1. Science Day held by ProTrainU.
Our paper "Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells" has been published in the Computational and Structural Biotechnology Journal.
The position paper "Is there a role for statistics in artificial intelligence" has been published online first in Advances in Data Analysis and Classification.
Our paper "Corona Health - A Study- and Sensor-Based Mobile App Platform Exploring Aspects of the COVID-19 Pandemic" has been published in the International Journal of Environmental Research and Public Health.
Our paper "Patient empowerment during the COVID-19 pandemic: Ensuring safe and fast communication of test results" has been published in the Journal of Medical Internet Research.
Our paper "Perspective on mHealth Concepts to Ensure Users’ Empowerment–From Adverse Event Tracking for COVID-19 Vaccinations to Oncological Treatment" has been published in IEEE Access.
Our report protocol "Digitalization of adverse event management in oncology to improve treatment outcome—A prospective study protocol" has been published in PLoS One.
We are happy we could contribute to Beutel et al (2021) "A prospective Feasibility Trial to Challenge Patient-Derived Pancreatic Cancer Organoids in Predicting Treatment Response" published in MDPI Cancers.