Medical Systems Biology
Hackathon Ulm
Cancelled!
The hackathon will start on the 10th of march at 10:00 am and ends at 6:00 pm, on the 11th of march it will start at 10:00 am and ends at 6:00 pm.
Location and travel information:
The DIFUTURE Hackathon will take place at Ulm University in O28 room H21, Albert-Einstein-Allee 11 - 89081 Ulm, Germany.
From Ulm Central Station: You can take the line number 2 or the bus number 5. You leave the public transportation at „Universität Süd“, change the side and head in the direction of east. Afterwards entering the O27, heading to the stairs in the middle and get one level up, heading then east again entering O28 and turn right.
Goals
- Reproduction of the "Demonstrator-Study" using DIFUTURE DUs
- Integration test of the DUs of a "Mini-DIC" (DUs 1/2/3/4/5/7/8/9)
- After the hackathon each site should be able to "install" its own DIC
- Development of an installation/deployment plan
- Planning the next developments/identification of "blind spots"
Agenda
- Define Roadmap of the meDICit
- Harmonization of the meDICit & Testing set-up (Identify existing issues, Test functionality/compatibility)
- Setting-up the meDICit - let's hack
- Data integration
- Solution script for set-up
- Simulate dataflow (Simulate dataflow from ETL to DW)
Timeline
10th of March
| Time | Topic |
| 09:45 - 10:00 | Get together and breakfast + Setup |
| 10:00 - 10:15 | Welcoming of the participants, Introduction to the Hackathon |
| 10:15 - 12:00 | Roadmap for DIFUTURE Deployment Units |
| 12:00 - 13:00 | Lunchbreak |
| 13:00 - 13:15 | First hint for the key |
| 13:15 - 15:15 | Start of Deployment Unit Harmonization – let‘s hack |
| 15:15 - 15:30 | Coffeebreak |
| 15:30 - 16:30 | Deployment Unit Harmonization – let‘s hack |
| 16:30 - 18:00 | Definition of the testing set-up |
| 18:00 | Pizza |
11th of March
| Time | Topic |
| 09:45 -10:00 | Get together and breakfast |
| 10:00 - 10:15 | Second hint for the key |
| 10:15 - 12:00 | Setting up the meDICit – let‘s hack |
| 12:00 - 13:00 | Lunchbreak |
| 13:00 - 15:15 | Setting up the meDICit – let‘s hack |
| 15:15 - 15:30 | Coffeebreak |
| 15:30 - 15:45 | Third hint for the key |
| 15:45 - 17:15 | Solution Script for set-up of the meDICit – Deployment Concept |
| 17:15 - 17:30 | Last hint for the key |
| 17:30 - 18:00 | Is there a key to leave the room? |
Latest News
Our first quantum computing paper "Leveraging quantum computing for dynamic analyses of logical networks in systems biology" has been published in Patterns.
Our paper "Unsupervised domain adaptation for the detection of cardiomegaly in cross-domain chest X-ray images" has been published in Frontiers in Artificial Intelligence.
- "The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination" has been published online first in the British Journal of Cancer.
"Vaccine Side Effects in Health Care Workers after Vaccination against SARS-CoV-2: Data from TüSeRe:exact Study" has been published in Viruses-Basel.
"PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults – a study protocol" has been published in BMC Neurology.
Our paper "Federated Electronic Data Capture (fEDC): Architecture and Prototype" has been accepted for publiaction in the Journal of Biomedical Informatics.
Our paper "Efficient cross-valdation traversals in feature subset selection" has been published in Scientific Reports.
Our paper "CANTATA - prediction of missing links in Boolean networks using genetic programming" has been published in Bioinformatics.
Our paper "Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives" has been published in the Journal of Medical Internet Research mhealth and uhealth.
Our paper "Identification of dynamic driver sets controlling phenotypical landscapes" has been published in the Computational and Structural Biotechnology Journal.
Congratulations to Dr. Silke Werle for winning the 1st Prize with her pitch at the 1. Science Day held by ProTrainU.
Our paper "Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells" has been published in the Computational and Structural Biotechnology Journal.
The position paper "Is there a role for statistics in artificial intelligence" has been published online first in Advances in Data Analysis and Classification.